Data and code for: Dynamic transposable element expression during Hydra head regeneration
Bash shell scripts for repeat modeler, masker, and STAR mapping. Custom script to keep class_id from repeat masker output (rmOUT_to_gtf.awk) Custom script to merge counts (R_script_merge_counts) Counts table including all genes and TEs used for analysis (tsv table) R s
Bash shell scripts for repeat modeler, masker, and STAR mapping.
Custom script to keep class_id from repeat masker output (rmOUT_to_gtf.awk)
Custom script to merge counts (R_script_merge_counts)
Counts table including all genes and TEs used for analysis (tsv table)
R script includes DDseq analysis, pairwise 12h comparisons, volcano plots, and heatmap code (qmd)
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Files are hosted on the source repository. Click download to access the full dataset.