Featured Dataset
Small fastq files for practising whole exome analysis
Tumor and normal lung cancer exome data from Ju et al. Genome Res. 22:436–445, 2012. Fastq files were retrieved from SRA (Sequence Read Archive): ERA148528 Original data is : 100bp paired-end reads, Illumina HiSeq 2000.
File Size12.2 MB
Data TypeDataset
Published2025
Licensecc-by-4.0
Total Views475
Total Downloads549
Tumor and normal lung cancer exome data from Ju et al. Genome Res. 22:436–445, 2012.
Fastq files were retrieved from SRA (Sequence Read Archive): ERA148528
Original data is :
- 100bp paired-end reads, Illumina HiSeq 2000.
- Mean depth 100X for the tumor sample, 30X for the normal (blood) sample (~15 Gb tumor ; ~7 Gb blood)
Fastq files were subsampled to keep only reads covering ~110kbases
Genes of interest with somatic mutations include: KRAS, VWDE, SLC5A1, STYXL2(DUSP27), CENPF
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Files are hosted on the source repository. Click download to access the full dataset.
Gautheret, Daniel (2025). Small fastq files for practising whole exome analysis. https://doi.org/10.5281/zenodo.17929063