Supporting Files for “ntRoot: Genetic ancestry inference across diverse genomic data types”
Supporting files for the protocol "ntRoot: Genetic ancestry inference across diverse genomic data types". The VCF file provided here was generating using paired-end WGS sequencing reads from the 1000 Genomes Project for the sample HG00864. First, the reads were aligned to the human referen
Supporting files for the protocol “ntRoot: Genetic ancestry inference across diverse genomic data types”.
The VCF file provided here was generating using paired-end WGS sequencing reads from the 1000 Genomes Project for the sample HG00864. First, the reads were aligned to the human reference genome using bwa mem. Then, variant calling was performed using GATK HaplotypeCaller.
The provided yaml file contains the version-pinned dependencies used in preparing the protocol. The file can be used to install the tools in a conda environment (conda install --file ntroot_protocol.conda-environment.yaml).
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Files are hosted on the source repository. Click download to access the full dataset.