TSENAT SALMON input datasets
This ZENODO repository contains transcript-level quantification results from Salmon (1.10.1) for 16 paired-end RNA-seq samples from the PRJNA737203 study (NCBI BioProject), used in TSENAT package. Dataset Contents: 16 Salmon quantification files (.tsv format) from S
This ZENODO repository contains transcript-level quantification results from Salmon (1.10.1) for 16 paired-end RNA-seq samples from the PRJNA737203 study (NCBI BioProject), used in TSENAT package.
Dataset Contents:
16 Salmon quantification files (.tsv format) from SRA accessions SRR14800475-SRR14800490
RNA-seq data generated from colorectal tissue samples (primary tumors and adjacent normal tissue)
Paired-end, strand-unspecific sequencing on Illumina NovaSeq 6000 platform
Sample Information:
Sample count: 16 samples
Tissue type: Colon
Sample types: 8 tumor samples, 8 adjacent normal tissue samples
Read length: 300 bp (average spot length)
Total bases: ~209 billion
Platform: Illumina NovaSeq 6000
Library: Paired-end, poly(A) selected cDNA
Processing:
Quantification against GENCODE v49 transcriptome reference (GRCh38.p14 human genome)
Salmon index built with decoy-aware alignment
Quality control performed with FALCO
Adapter and quality trimming with Trim Galore (quality threshold: 20, minimum length: 20 bp)
Metadata:
BioProject: PRJNA737203
Study: SRP323863
Data provider: Tongji University School of Medicine
Release date: 2022-07-01
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Files are hosted on the source repository. Click download to access the full dataset.