Virus Pathogen Database for EsViritu
Databases for EsViritu: Read mapping pipeline for detection and measurement of virus pathogens from metagenomic data File descriptions v3.2.4/ virus_pathogen_database.all_metadata.tsv = sequence and taxonomy info for each
Databases for EsViritu: Read mapping pipeline for detection and measurement of virus pathogens from metagenomic data
File descriptions
v3.2.4/
virus_pathogen_database.all_metadata.tsv = sequence and taxonomy info for each sequence in database
virus_pathogen_database.fna = fasta formatted nucleotide database of all virus genomes and segments
virus_pathogen_database.mmi = minimap2 formatted index of database (for short read mapping)
Relates to the tool in the following repository:
Updates since 3.2.2:
- Added over 500 genomes from family Arteriviridae (previously missing)
- Added 8 genomes from species Asfivirus haemorrhagiae
- Added one each influenza A H3N2 and H1N1 genome for 2025 season
- Masked some virus genomes to avoid mislabeling human/animal DNA
- Masked a few virus genomes with low-complexity repeat regions
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Files are hosted on the source repository. Click download to access the full dataset.