SCHOLARLY PUBLICATION ✓ Open Access

ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data

Martin T. Morgan, Simon Anders, Michael F. Lawrence, Patrick Aboyoun, Hervé Pagès, Robert C. Gentleman

📖 Bioinformatics → 📅 2009-08-03 🔗 DOI: 10.1093/bioinformatics/btp450

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📄 Abstract

UNLABELLED: ShortRead is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources. AVAILABILITY AND IMPLEMENTATION: This package is implemented in R and available at the Bioconductor web site; the package contains a ‘vignette’ outlining typical work flows.

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